 Michael Krayer
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b91f5e95bb
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further improved serial
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2022-03-25 16:39:14 +01:00 |
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Michael Krayer
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c072e41677
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first version of serial tool: can compute Q, but untested
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2022-03-24 21:11:44 +01:00 |
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Michael Krayer
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e3b31c7f5e
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removed debug timing output
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2021-08-20 10:50:35 +02:00 |
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Michael Krayer
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3d6ecf2bda
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fixed label() for BinaryField
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2021-08-19 16:31:53 +02:00 |
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Michael Krayer
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928cc9c9d2
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it works now
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2021-08-19 09:29:43 +02:00 |
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Michael Krayer
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e95b7dc74a
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its getting better
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2021-08-18 02:24:20 +02:00 |
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Michael Krayer
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16e67ad666
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just a backup, will be changed now
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2021-08-17 23:19:45 +02:00 |
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Michael Krayer
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2acef17323
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faster binary hole filling
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2021-08-16 21:46:40 +02:00 |
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Michael Krayer
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c5908e00f5
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update: inside/outside detection does not work properly
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2021-08-16 12:58:23 +02:00 |
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Michael Krayer
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d95453ad45
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WIP: completely messed up. trying to fix surface normal directions
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2021-08-13 22:05:35 +02:00 |
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Michael Krayer
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6e3564c3c1
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implemented feature search. it should work now and perform well.
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2021-08-13 02:04:15 +02:00 |
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Michael Krayer
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cee9a661c8
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jit minmax is now slower than conventional: remove numba dependency
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2021-08-13 01:25:50 +02:00 |
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Michael Krayer
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0723c0b769
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storing triangulation data as long list of vertices now. Seems to have improved performance due to better memory access pattern.
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2021-08-13 01:16:27 +02:00 |
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Michael Krayer
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1a8afb97d0
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first implementation of find_features(). At the moment it only returns whether or not a point is inside
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2021-08-12 21:53:20 +02:00 |
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Michael Krayer
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803a8ffee1
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implemented two methods for nearest triangle
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2021-08-12 13:16:05 +02:00 |
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Michael Krayer
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41a64ab470
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switched to another formulation of the algorithm which computes surface normal of triangle: this is necessary for inside/outside check
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2021-08-12 10:34:56 +02:00 |
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Michael Krayer
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0792d87394
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changed computation of triangle normal: should give the same result as before. Implemented Möller-Trumbore ray-triangle intersection calculation
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2021-08-12 10:16:06 +02:00 |
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Michael Krayer
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fdbe6fb70b
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WIP: find_region
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2021-08-11 11:31:02 +02:00 |
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Michael Krayer
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6623c67c86
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implemented and improved routines. Can now extract features, fill holes and produce vtk output
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2021-08-10 21:00:18 +02:00 |
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Michael Krayer
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fd23122470
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Features3d now fully based on triangulation: needs to be tested and some routines implemented
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2021-08-10 02:17:58 +02:00 |
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Michael Krayer
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0c2db9fa79
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some bugfixes. tested against spherical shell
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2021-08-09 18:03:17 +02:00 |
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Michael Krayer
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bfab713bb0
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cell property computation now only take ~15% of original timing after implementing it myself
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2021-08-09 17:52:31 +02:00 |
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Michael Krayer
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84bd63c95b
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bugfix: type
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2021-08-09 16:37:13 +02:00 |
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Michael Krayer
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57410abc99
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implemented features3d; need some testing and maybe optimization; still includes debug output
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2021-08-09 16:21:35 +02:00 |
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Michael Krayer
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56b413cfed
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implemented surface area calculation in binary data. Does not work too well.
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2021-08-07 03:35:28 +02:00 |
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Michael Krayer
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d7658ea659
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added structure elements and weights for voxel sruface area estimation
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2021-08-07 01:12:25 +02:00 |
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Michael Krayer
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2b4be2a375
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bugfix: threshold() Field3d. Removed ConnectedRegions class, it has been replaced entirely by BindaryFieldNd
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2021-08-06 22:55:02 +02:00 |
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Michael Krayer
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f5714e1987
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clipping and thresholding for particles; improvements for field
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2021-08-06 22:02:35 +02:00 |
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Michael Krayer
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4c84ea6adc
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clipping routines
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2021-08-06 20:35:27 +02:00 |
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Michael Krayer
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00128cc24e
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triangulation using original scalar data or voxel based
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2021-08-06 04:43:24 +02:00 |
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Michael Krayer
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c71f86a33b
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implemented isolation/triangulation. needs to be tested
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2021-08-06 00:34:32 +02:00 |
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Michael Krayer
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2d5ff2fbe1
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bugfix for wrap flag: structure was being tagged as wrapped because duplicated cell had an unconnected cell
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2021-08-05 22:33:51 +02:00 |
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Michael Krayer
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296dacd82a
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First implementation of BinaryFieldNd; passed 2d tests
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2021-08-05 22:12:28 +02:00 |
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Michael Krayer
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9527941936
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added deep copy flag. The default is now shallow copy!
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2021-08-05 00:20:58 +02:00 |
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Michael Krayer
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dd92940b24
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ability to fill holes in thresholded data
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2021-08-04 00:57:35 +02:00 |
Michael Stumpf
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34d77ad2ac
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convenience method for grid as numpy array
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2021-07-17 14:39:40 +02:00 |
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Michael Krayer
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ec23f3acd4
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fixed false usage of _dim -> dim() method should be called. UNTESTED
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2021-07-16 22:03:10 +02:00 |
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Michael Krayer
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8a50af80b9
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added ConnectedRegions
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2021-06-25 00:49:37 +02:00 |
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Michael Krayer
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09eafc78a9
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division operator
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2021-06-24 13:04:35 +02:00 |
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Michael Krayer
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625d5fff42
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some more output for assertion error
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2021-06-15 15:55:09 +02:00 |
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Michael Krayer
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d21bf975fd
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bugfix to previous commit
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2021-06-03 14:59:32 +02:00 |
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Michael Krayer
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3afdee9e15
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shift_origin bugfix if slightly out of bounds
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2021-06-03 13:22:02 +02:00 |
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Michael Krayer
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d256d4ec2c
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output rel_shift if assertion false
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2021-06-03 12:48:43 +02:00 |
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Michael Krayer
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83bfca08f9
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changed collapse threshold
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2021-06-03 12:47:42 +02:00 |
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Michael Krayer
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928f3bcde9
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some hdf5 utilities
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2021-06-03 01:40:58 +02:00 |
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Michael Krayer
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fcd989b3f9
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saving of reduced field for visualization at later point; save_state now based on hdf5
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2021-06-02 21:51:47 +02:00 |
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Michael Krayer
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0e48c9b382
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added striding to parallel routines in order to gather a complete field at rank 0
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2021-06-02 09:35:16 +02:00 |
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Michael Krayer
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3366816adf
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first production version for filtered plotting
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2021-06-01 12:16:10 +02:00 |
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Michael Krayer
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8dd8161537
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implemented padding, laplacian etc
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2021-05-30 15:09:33 +02:00 |
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Michael Krayer
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4a33b5f00a
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added integration routine: useful for statistics
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2021-05-28 14:26:22 +02:00 |