function [q] = read_field_complete_ucf(file,ifield,varargin) % [data] = read_field_complete_ucf(file,ifield,varargin) % Reads a specific field from all processor chunks. % Input % file file to be read % ifield field to be read % 'uvwp': 1:u, 2:v, 3:w, 4:p % 'scal': 1:s1, 2:s2, ... % Optional input (key/value pair) % timestep index of timestep to be read (default: 1) % verbosity verbose output? (default: no) % debug debug output? (default: no) % Output % data partial field with dim(nxl+2*ighost,nyl+2*ighost,nzl+2*ighost) % Parse optional input arguments par = inputParser; addOptional(par,'timestep',1,@isnumeric); addOptional(par,'verbosity',0,@isnumeric); addOptional(par,'debug',0,@isnumeric); parse(par,varargin{:}); istep = par.Results.timestep; % Parse filename [fdir,fbase,fext] = fileparts(file); fname = sprintf('%s/%s.%05d',fdir,fbase,0); % Open first file obj = ucf('verbosity',par.Results.verbosity,'debug',par.Results.debug); obj.open(fname); if ~obj.validateType('field') error('read error: no field data.'); end % Read raw data [data,params] = obj.readSet(istep,ifield); params = cast(params,'double'); ighost = params(1); ib = params(2); jb = params(3); kb = params(4); nxl = params(5); nyl = params(6); nzl = params(7); nx = params(8); ny = params(9); nz = params(10); data = reshape(data,nxl+2*ighost,nyl+2*ighost,nzl+2*ighost); if ighost data = data(2:end-1,2:end-1,2:end-1); end % Create global array and assign chunk q = zeros(nx,ny,nz,class(data)); q(ib:ib+nxl-1,jb:jb+nyl-1,kb:kb+nzl-1) = data; % Close the first file obj.close(); % Now loop consecutively through files ifile = 1; fname = sprintf('%s/%s.%05d',fdir,fbase,ifile); while exist(fname,'file') % Open file obj = ucf('verbosity',par.Results.verbosity,'debug',par.Results.debug); obj.open(fname); if ~obj.validateType('field') error('read error: no field data.'); end % Read raw data [data,params] = obj.readSet(istep,ifield); params = cast(params,'double'); ighost = params(1); ib = params(2); jb = params(3); kb = params(4); nxl = params(5); nyl = params(6); nzl = params(7); data = reshape(data,nxl+2*ighost,nyl+2*ighost,nzl+2*ighost); if ighost data = data(2:end-1,2:end-1,2:end-1); end % Assign chunk q(ib:ib+nxl-1,jb:jb+nyl-1,kb:kb+nzl-1) = data; % Close the first file obj.close(); % Move on to next file ifile = ifile+1; fname = sprintf('%s/%s.%05d',fdir,fbase,ifile); end end