function [s] = read_scal_complete_ucf(file,varargin) % [s] = read_scal_complete_ucf(file,varargin) % Reads u,v,w,p from all processor chunks and combines them to a single field. % Input % file file name (if tar-mode: ustar handle) % ? step index of timestep to be read (default: 1) % ? verbosity verbose output? (default: 0) % ? debug debug output? (default: 0) % ? tarmode read from tar-file? (default: 0) % Output % s complete scalar fields with dim(nx,ny,nz,nscal) % Parse optional input arguments par = inputParser; addParameter(par,'step',1,@isnumeric); addParameter(par,'verbosity',0,@isnumeric); addParameter(par,'debug',0,@isnumeric); addParameter(par,'tarmode',0,@isnumeric); parse(par,varargin{:}); istep = par.Results.step; % Open first file obj = ucf('verbosity',par.Results.verbosity,'debug',par.Results.debug); if par.Results.tarmode fname = sprintf('scal.%05d',0); obj.opentar(file.pointer(fname)); else [fdir,fbase,fext] = fileparts(file); fname = sprintf('%s/%s.%05d',fdir,fbase,0); obj.open(fname); end if ~obj.validateType('field') error('read error: no field data.'); end nscal = obj.getNumDatasets(istep); % Read raw data q = cell(1,nscal); for iset=1:nscal [data,params] = obj.readSet(istep,iset); params = cast(params,'double'); ighost = params(1); ib = params(2); jb = params(3); kb = params(4); nxl = params(5); nyl = params(6); nzl = params(7); nx = params(8); ny = params(9); nz = params(10); q{iset} = reshape(data,nxl+2*ighost,nyl+2*ighost,nzl+2*ighost); if ighost q{iset} = q{iset}(2:end-1,2:end-1,2:end-1); end end % Reassign content from loop and create global arrays s = zeros(nx,ny,nz,nscal,class(q{1})); for iscal=1:nscal s(ib:ib+nxl-1,jb:jb+nyl-1,kb:kb+nzl-1,iscal) = q{iset}; end % Close the first file obj.close(); % Now loop consecutively through files ifile = 1; if par.Results.tarmode loopCondition = @(x) file.isSubfile(x); fname = sprintf('scal.%05d',ifile); else loopCondition = @(x) exist(x,'file'); fname = sprintf('%s/%s.%05d',fdir,fbase,ifile); end while loopCondition(fname) % Open file obj = ucf('verbosity',par.Results.verbosity,'debug',par.Results.debug); if par.Results.tarmode obj.opentar(file.pointer(fname)); else obj.open(fname); end if ~obj.validateType('field') error('read error: no field data.'); end % Read raw data q = cell(1,nscal); for iset=1:nscal [data,params] = obj.readSet(istep,iset); params = cast(params,'double'); ighost = params(1); ib = params(2); jb = params(3); kb = params(4); nxl = params(5); nyl = params(6); nzl = params(7); q{iset} = reshape(data,nxl+2*ighost,nyl+2*ighost,nzl+2*ighost); if ighost q{iset} = q{iset}(2:end-1,2:end-1,2:end-1); end end % Reassign content from loop and create global arrays for iscal=1:nscal s(ib:ib+nxl-1,jb:jb+nyl-1,kb:kb+nzl-1,iscal) = q{iset}; end % Close file obj.close(); % Move on to next file ifile = ifile+1; if par.Results.tarmode fname = sprintf('scal.%05d',ifile); else fname = sprintf('%s/%s.%05d',fdir,fbase,ifile); end end end