function [data,ib,jb,kb,nxl,nyl,nzl,ighost] = read_field_chunk_ucf(file,field,varargin) % [data,ib,jb,kb,nxl,nyl,nzl,ighost] = read_field_chunk_ucf(file,field,varargin) % Reads single field from one processor chunk. % Input % file file name (if tar-mode: ustar handle) % field field to be read % {'u','v','w','p','s1','s2',...} % or integer with dataset index (not in tar-mode) % ? step index of timestep to be read (default: 1) % ? ghost keep ghost cells? (default: yes) % ? verbosity verbose output? (default: no) % ? debug debug output? (default: no) % ? tarmode read from tar-file? (default: 0) % ? rank rank of processor, ignored if not in tarmode (default: 0) % Output % data partial field with dim(nxl+2*ighost,nyl+2*ighost,nzl+2*ighost) % ib,jb,kb global index of first grid point of the partial field w/o ghost cells % nxl,nyl,nzl local field size w/o ghost cells % ighost ghost cell flag % Parse optional input arguments par = inputParser; addParamValue(par,'step',1,@isnumeric); addParamValue(par,'ghost',1,@isnumeric); addParamValue(par,'verbosity',0,@isnumeric); addParamValue(par,'debug',0,@isnumeric); addParamValue(par,'tarmode',0,@isnumeric); addParamValue(par,'rank',0,@isnumeric); parse(par,varargin{:}); istep = par.Results.step; keepghost = par.Results.ghost; % Parse field if ischar(field) switch field(1) case 'u'; ifield=1; fbase='uvwp'; case 'v'; ifield=2; fbase='uvwp'; case 'w'; ifield=3; fbase='uvwp'; case 'p'; ifield=4; fbase='uvwp'; case 's'; ifield=str2double(field(2:end)); fbase='scal'; end elseif isnumeric(field) if par.Results.tarmode error('field cannot be numeric, if tar-mode is used.'); end ifield=field; fbase=''; else error('field must either be numeric or string.'); end % Open file obj = ucf('verbosity',par.Results.verbosity,'debug',par.Results.debug); if par.Results.tarmode subfile = sprintf('%s.%05d',fbase,par.Results.rank); obj.opentar(file.pointer(subfile)); else obj.open(file); end % Read raw data if ~obj.validateType('field') error('read error: no field data.'); end [data,params] = obj.readSet(istep,ifield); params = cast(params,'double'); ighost = params(1); ib = params(2); jb = params(3); kb = params(4); nxl = params(5); nyl = params(6); nzl = params(7); nx = params(8); ny = params(9); nz = params(10); data = reshape(data,nxl+2*ighost,nyl+2*ighost,nzl+2*ighost); if ighost && ~keepghost data = data(2:end-1,2:end-1,2:end-1); ighost = 0; end % Close UCF file obj.close(); end