function [s] = read_scal_complete_ucf(file,varargin) % [s] = read_scal_complete_ucf(file,varargin) % Reads u,v,w,p from all processor chunks and combines them to a single field. % Input % file file to be read % Optional input (key/value pair) % timestep index of timestep to be read (default: 1) % verbosity verbose output? (default: no) % debug debug output? (default: no) % Output % s complete scalar fields with dim(nx,ny,nz,nscal) % Parse optional input arguments par = inputParser; addOptional(par,'timestep',1,@isnumeric); addOptional(par,'verbosity',0,@isnumeric); addOptional(par,'debug',0,@isnumeric); parse(par,varargin{:}); istep = par.Results.timestep; % Parse filename [fdir,fbase,fext] = fileparts(file); fname = sprintf('%s/%s.%05d',fdir,fbase,0); % Open first file obj = ucf(fname,'read','verbosity',par.Results.verbosity,'debug',par.Results.debug); if ~obj.validateType('field') error('read error: no field data.'); end nscal = obj.getNumDatasets(istep); % Read raw data q = cell(1,nscal); for iset=1:nscal [data,params] = obj.readSet(istep,iset); params = cast(params,'double'); ighost = params(1); ib = params(2); jb = params(3); kb = params(4); nxl = params(5); nyl = params(6); nzl = params(7); nx = params(8); ny = params(9); nz = params(10); q{iset} = reshape(data,nxl+2*ighost,nyl+2*ighost,nzl+2*ighost); if ighost q{iset} = q{iset}(2:end-1,2:end-1,2:end-1); end end % Reassign content from loop and create global arrays s = zeros(nx,ny,nz,nscal,class(q{1})); for iscal=1:nscal s(ib:ib+nxl-1,jb:jb+nyl-1,kb:kb+nzl-1,iscal) = q{iset}; end % Close the first file obj.close(); % Now loop consecutively through files ifile = 1; fname = sprintf('%s/%s.%05d',fdir,fbase,ifile); while exist(fname,'file') % Open file obj = ucf(fname,'read','verbosity',par.Results.verbosity,'debug',par.Results.debug); if ~obj.validateType('field') error('read error: no field data.'); end % Read raw data q = cell(1,nscal); for iset=1:nscal [data,params] = obj.readSet(istep,iset); params = cast(params,'double'); ighost = params(1); ib = params(2); jb = params(3); kb = params(4); nxl = params(5); nyl = params(6); nzl = params(7); q{iset} = reshape(data,nxl+2*ighost,nyl+2*ighost,nzl+2*ighost); if ighost q{iset} = q{iset}(2:end-1,2:end-1,2:end-1); end end % Reassign content from loop and create global arrays for iscal=1:nscal s(ib:ib+nxl-1,jb:jb+nyl-1,kb:kb+nzl-1,iscal) = q{iset}; end % Close file obj.close(); % Move on to next file ifile = ifile+1; fname = sprintf('%s/%s.%05d',fdir,fbase,ifile); end end